In the field of Interdisciplinary Studies, the University offers the Master's Programme in Theological Studies that can also be studied by students without a theological studies background in order to deepen their knowledge in an interdisciplinary field of theology (philosophy of religion, medical ethics, religious law, among others). For students who have acquired a bachelor's degree in ecclesiastical studies, the master's programme offers a study programme that can be adapted in a way that matches a Church Licentiate Degree. In the doctoral field, the PhD Programme in Theological Studies is offered.

Starting in the winter semester of 2025, the University of Vienna offers at the Faculty of Protestant Theology a new English-language Master's programme “Religion in Europe”, which provides a unique opportunity to explore the phenomenon of religion in its many dimensions.